關於「Stringtie github」標籤，搜尋引擎有相關的訊息討論：

gpertea/stringtie: Transcript assembly and quantification for RNA-Seq。

Building the latest version from the repository. In order to compile the StringTie source in this GitHub repository the following steps can be taken: git clone ...： 。

skovaka/stringtie2: Transcript assembly and quantification ... - GitHub。

Obtaining and installing StringTie. In order to build StringTie from this GitHub repository the following steps can be taken: git clone https://github.com/ ...： 。

Transposable element sequence fragments incorporated into coding ...。

2021年8月14日 · StringTie (37) was used to assemble the transcripts from the merged aligned reads, guided by the GENCODE v32 annotations.。

a novel pooling approach for discovering intergenic transcripts from ...。

2020年9月21日 · StringTie, a more recent method, improved prediction accuracy and led to ... are available at GitHub (https://github.com/pliu55/PRAM_paper).。

Analysis and comprehensive comparison of PacBio and nanopore ...。

2020年6月12日 · Among them, 5,682,227, 5,563,209, and 5,207,164 FL reads were obtained ... For Illumina sequencing, HISAT2 and StringTie were used for reads ...。

Transcriptome assembly from long-read RNA-seq alignments with ...。

2019年12月16日 · StringTie and other transcriptome assemblers estimate transcript abundance ... (blue) and FLAIR (magenta) on real PacBio (FL = full length, ...。

Single-cell RNA-seq reveals hidden transcriptional variation ... - eLife。

2018年3月27日 · We then looked for Stringtie transcript features overlapping each mRNA ... released code (https://github.com/KafsackLab/scRNAseq-Malaria).。

CircAST: Full-length Assembly and Quantification of Alternatively ...。

CircAST can be accessed freely at https://github.com/xiaofengsong/CircAST. ... StringTie enables improved reconstruction of a transcriptome from RNA-seq ...。

CIRCexplorer pipelines for circRNA annotation and quantification ...。

2021年2月12日 · CIRCexplorer, TopHat/STAR, https://github.com/YangLab/ ... The StringTie [57] can be downloaded from https://ccb.jhu.edu/software/stringtie, ...。

[PDF] Alternative splicing detection across different tissues in cork oak。

genome, and Cufflinks and StringTie for transcript assembly. STAR ... pared to original genome annotation using gffcompare utility (https://github.